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Trans-eQTLs across different cancer types

In trans-eQTL analysis, we identified 231,210 eQTL−gene pairs at FDR < 0.05 in 33 cancer types for users to search or browse.

     

e.g., "PRAD"
e.g., "rs7231881"
e.g., "SMAD4"


     

Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-valule
Display
THCA rs76329678 chr5:49830286 A/G LOC647121 chr1:121260910-121313686:+ -0.38 -7.89 2.09E-14 Box Plot
THCA rs76331955 chr2:132211111 C/T CCDC74B chr2:130896860-130902707:- 0.36 6.67 7.3E-11 Box Plot
THCA rs76336133 chr2:35279401 C/A FAM86B2 chr8:12283123-12293852:- 0.37 5.95 5.2E-9 Box Plot
THCA rs76363440 chr6:151767483 A/G NEK5 chr13:52607747-52703214:- 0.44 6.29 7.19E-10 Box Plot
THCA rs7638833 chr3:125697172 C/T ROPN1 chr3:123687368-123711025:- -0.34 -6.04 3.09E-9 Box Plot
THCA rs76390071 chr14:66715902 G/A ATP6V1D chr14:67761088-67826982:- 0.42 7.2 2.4E-12 Box Plot
THCA rs7644455 chr3:125799434 G/A ROPN1 chr3:123687368-123711025:- -0.34 -6.21 1.16E-9 Box Plot
THCA rs7644634 chr3:105480291 C/T FAM182B chr20:25744102-25848861:- -0.3 -5.93 5.83E-9 Box Plot
THCA rs76450758 chr4:61520633 G/T SCLY chr2:238969530-239008054:+ 0.46 5.99 4.11E-9 Box Plot
THCA rs7646910 chr3:184355688 A/G CNST chr1:246729746-246831886:+ 0.19 6.14 1.77E-9 Box Plot
THCA rs7647154 chr3:125800141 C/A ROPN1 chr3:123687368-123711025:- -0.34 -6.2 1.25E-9 Box Plot
THCA rs764738 chr8:10144137 A/G SGK223 chr8:8175258-8244008:- -0.33 -6.4 3.68E-10 Box Plot
THCA rs76475374 chr3:96801339 T/C PRPF31 chr19:54618790-54635150:+ -0.38 -6.03 3.34E-9 Box Plot
THCA rs7649279 chr3:125803686 A/G ROPN1 chr3:123687368-123711025:- -0.35 -6.28 7.66E-10 Box Plot
THCA rs76501180 chr7:140146781 GT/G LOC441455 chr9:99488103-99489749:+ 0.5 6.55 1.45E-10 Box Plot